species:   Scscl
pid:       PID1698
parent:    Ssc-milR-174
paralog:   
locus:     NW_001820824.1:42279-42337
matures:   ['UGGACUGAUGGCAACGAUGGAUU', 'CCCAUCGAGAUUGACCAACGAUU']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820824.1:42279-42337

94 out of bounds
13 alignments
3 proper strand
3 stranded perfect matches

************************          *************************
GCCCAUCGAGAUUGACCAACGAUUUUCUGAUGAAAGUGGACUGAUGGCAACGAUGGAUU
..((((((...(((.(((.(.((((((....)))))).).....))))))))))))...
------------------------------------UGGACUGAUGGCAACGAUGGAUU l=23 a=1 c
-CCCAUCGAGAUUGACCAACGAUU----------------------------------- l=23 a=0 c*
------------------------------------UGGACUGAUGGCAACGAUGGAUU l=23 a=1 ma
-CCCAUCGAGAUUGACCAACGAUU----------------------------------- l=23 a=0 ma*

------------------------------UGAAAGUGGACUGAUGGCAACG------- l=22 a=1 
------------------------------------UGGACUGAUGGCAACGAUGGA-- l=21 a=1 
------------------------------------UGGACUGAUGGCAACGAUGGAUU l=23 a=1 (c,ma)

mb-01011
ax-1001011
ku-01
ss-110110001100
fn-101
